616.234.5000

Publications

Genomics

Selected Publications

deCarvalho AC, Kim H, Poisson LM, Winn ME, Mueller C, Cherba D, Koeman J, Seth S, Protopopov A, Felicella M, Zheng S, Multani A, Jiang Y, Zhang J, Nam DH, Petricoin EF, Chin L, Mikkelsen T, Verhaak RGW. 2018. Discordant inheritance of chromosomal and extrachromosomal DNA elements contributes to dynamic disease evolution in glioblastoma. Nat Genet 50(5):708–717.

Herbert ZT, Kershner JP, Butty VL, Thimmapuram J, Choudhari S, Alekseyev YO, Fan J, Podnar JW, Wilcox E, Gipson J, Gillaspy A, Jepsen K, BonDurant SS, Morris K, Berkeley M, LeClerc A, Simpson SD, Sommerville G, Grimmett L, Adams M, Levine SS. 2018. Cross-site comparison of ribosomal depletion kits for Illumina RNAseq library construction. BMC Genomics 19:199. 

Gaskell J, Blanchette RA, Stewart PE, BonDurant S, Adams M, Sabat G, Kersten P, Cullen D. 2016. Transcriptome and secretome analyses of the wood decay fungus Wolfiporia cocos support alternative mechanisms of lignocellulose conversion. Appl Environ Micro 82(13):3979–3987.

Baker EC, Wang B, Bellora N, Peris D, Hulfachor AB, Koshalek JA, Adams M, Libkind D, Hittinger CT. 2015. The genome sequence of Saccharomyces eubayanus and the domestication of lager-brewing yeasts. Mol Bio Evol 32: 2818-2831.

O’Grady T, Cao S, Strong MJ, Concha M, Wang X, BonDurant S, Adams M, Baddoo M, Srivastav SK, Lin Z, Fewell C, Yin Q, Flemington EK. 2014. Global bidirectional transcription of the Epstein-Barr Virus genome during reactivation. J Virology 88(3):1604–1616.

Newell MA, Vogel KE, Adams M, Aydin N, Bodnar AL, Ali M, Moran Lauter AN, Scott MP 2014. Genetic and biochemical differences in populations bred for extremes in maize grain methionine concentration. BMC Plant Bio 14:49.

Tromp DPM, Grupe DW, Oathes DJ, McFarlin DR, Hernandez PJ, Kral TRA, Lee JE, Adams M, Alexander AL, Nitschke JB. 2012. Reduced structural connectivity of frontolimbic pathway in generalized anxiety disorder. Arch Gen Psychiatry 69(9):925.

Robinson SJ, Samuel MD, Johnson CJ, Adams M, McKenzie DI. 2012. Emerging prion disease drives host selection in a wildlife population. Ecol Appl 22(3):1050–1059.

Kolb AW, Adams M, Cabot EL, Craven M, Brandt CR. 2011. Multiplex sequencing of seven ocular herpes virus type-1 genomes: phylogeny, sequence variability and SNP distribution. Invest Ophthalmol Vis Sci. 52(12):9061–9073.

Kerley-Hamilton JS, Shanker S, Geskes J, Nicolet CM, Wright C, Thimmaupram J, Adams M, Gaudenz K, Fleharty B, Couget J, Warner D, Herbert ZT, Grove DS, Chiuttur S, Wilcox E, Beckloff N, Levine SS. Inter-laboratory comparisons of DNA and RNA quality assessment. (white paper)